PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0032ss01580.1
Common NameLR48_Vigan08g141100
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 222aa    MW: 24535.2 Da    PI: 5.9528
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0032ss01580.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.91.9e-164898155
                AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                       + y+GVr++   +rWv+eIr+p++   + r+++g++ ++e+Aa+a++ a ++l+g
  Vang0032ss01580.1 48 PVYRGVRQRN-GNRWVCEIREPVK---KSRIWVGTYPSPEMAARAHDVAVLALNG 98
                       68*****999.9*********654...5*********************999876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.8E-114898IPR001471AP2/ERF domain
PROSITE profilePS5103220.57449106IPR001471AP2/ERF domain
SMARTSM003801.2E-2349112IPR001471AP2/ERF domain
SuperFamilySSF541714.32E-1949108IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.6E-2749108IPR001471AP2/ERF domain
PRINTSPR003672.2E-65061IPR001471AP2/ERF domain
CDDcd000181.68E-2650108No hitNo description
PRINTSPR003672.2E-67288IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MINMNMKNNE SPCSKSQSPP NSDPLCDSSN PSHKRKAGRK KFRETRHPVY RGVRQRNGNR  60
WVCEIREPVK KSRIWVGTYP SPEMAARAHD VAVLALNGIS AKFNFPDSVS LLPLAKSSSA  120
ADIREAAKTA TVDDTFTPNT SFSCSSHGNS SFEENGNAEE SFLNTSIHND ESETVFFDEE  180
ALYNMPGLLD SMAEGLLITP PSRALVWDHS DSEIDLTLWN N*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014523454.11e-130PREDICTED: dehydration-responsive element-binding protein 1F-like
SwissprotA2WZI45e-53DRE1F_ORYSI; Dehydration-responsive element-binding protein 1F
SwissprotQ8S9Z55e-53DRE1F_ORYSJ; Dehydration-responsive element-binding protein 1F
TrEMBLA0A0L9V7D31e-161A0A0L9V7D3_PHAAN; Uncharacterized protein
STRINGGLYMA11G19341.11e-111(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24333224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51990.13e-47C-repeat-binding factor 4
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]